Package: pourrna
Version: 1.2.0-1
Architecture: amd64
Maintainer: Gregor Entzian <entzian@tbi.univie.ac.at>
Installed-Size: 1838
Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.3.1), libstdc++6 (>= 12), viennarna-dev (>= 2.4.11)
Conflicts: pourrna
Provides: pourrna
Filename: amd64/pourrna_1.2.0-1_amd64.deb
Size: 292374
MD5sum: b608311d0b348172220dca2ee923f6f0
SHA1: 5824df31ae2a0b84ad82c1845346bb4b3c561d75
SHA256: 92790063c6e35b35df723ddc2e3cbf008e25662d31eba60e21030c2113e7c228
Section: science
Priority: optional
Description: Compute local minima and respective transition rates of an RNA energy landscape.
 pourRNA takes an RNA sequence as input and explores the landscape topology
 locally. This means the flooding algorithm will be applied for each gradient
 basin. The partition function for the basin and also for the transitions to
 neighbored minima will be calculated during the flooding.
 In order to speed up the computation of the rate matrix, local filtering
 techniques can be applied. These filters prune non-relevant transitions
 directly after flooding a gradient basin. As a result, the transition rates
 for the filtered landscape topology can be calculated faster than with global
 approaches. The advantage increases with increasing size of the energy
 landscape.

Package: python3-rnaxplorer
Source: rnaxplorer
Version: 0.9.0
Architecture: amd64
Maintainer: Gregor Entzian <entzian@tbi.univie.ac.at>
Installed-Size: 8
Depends: python3
Conflicts: python3-rnaxplorer
Filename: amd64/python3-rnaxplorer_0.9.0_amd64.deb
Size: 1598
MD5sum: 4cb1761ad125982344e8b07b28a79177
SHA1: 866545dbf7f38db3b0bc293c8d561cdddd76a32a
SHA256: f6f6927d15dc454b62e08391535b3cc7a2aa1426d4574929c46f6618b207f862
Section: python
Priority: optional
Description: Python 3 bindings to RNAxplorerlib
 The RNAxplorer class to access RNAxplorerlib C-library functions from
 within Python 3 scripts

Package: rnaxplorer
Version: 0.9.0
Architecture: amd64
Maintainer: Gregor Entzian <entzian@tbi.univie.ac.at>
Installed-Size: 8
Depends: viennarna-dev (>= 2.4.14)
Recommends: python-rnaxplorer
Conflicts: rnaxplorer
Provides: rnaxplorer
Filename: amd64/rnaxplorer_0.9.0_amd64.deb
Size: 1712
MD5sum: 60fd6b337abacbc368857c0620d98df6
SHA1: 924d893cf191823f0bbea30023e935a64180c719
SHA256: 3c59643053fbaa82161eb8590e505464535aaec2c01a371bb608936c8b17753c
Section: science
Priority: optional
Description: Sample RNA secondary structures and explore the RNA energy landscape.
 RNAxplorer takes an RNA sequence as input and samples secondary structures that
 represent the most important structures of the RNA conformation space and thus
 are well suited to compute RNA folding kinetics.