Go to the documentation of this file. 1 #ifndef VIENNA_RNA_PACKAGE_MEA_H
2 #define VIENNA_RNA_PACKAGE_MEA_H
73 #ifndef VRNA_DISABLE_BACKWARD_COMPATIBILITY
75 #ifdef VRNA_WARN_DEPRECATED
76 # if defined(__clang__)
77 # define DEPRECATED(func, msg) func __attribute__ ((deprecated("", msg)))
78 # elif defined(__GNUC__)
79 # define DEPRECATED(func, msg) func __attribute__ ((deprecated(msg)))
81 # define DEPRECATED(func, msg) func
84 # define DEPRECATED(func, msg) func
107 "Use vrna_MEA() or vrna_MEA_from_plist() instead!");
112 const char *sequence,
116 "Use vrna_MEA() or vrna_MEA_from_plist() instead!");
Data structure representing a single entry of an element probability list (e.g. list of pair probabil...
Definition: structures.h:453
float MEA(plist *p, char *structure, double gamma)
Computes a MEA (maximum expected accuracy) structure.
char * vrna_MEA(vrna_fold_compound_t *fc, double gamma, float *mea)
Compute a MEA (maximum expected accuracy) structure.
The data structure that contains temperature scaled Boltzmann weights of the energy parameters.
Definition: basic.h:103
Various data structures and pre-processor macros.
The data structure that contains the complete model details used throughout the calculations.
Definition: model.h:180
The most basic data structure required by many functions throughout the RNAlib.
Definition: fold_compound.h:132
char * vrna_MEA_from_plist(vrna_ep_t *plist, const char *sequence, double gamma, vrna_md_t *md, float *mea)
Compute a MEA (maximum expected accuracy) structure from a list of probabilities.
Functions to deal with sets of energy parameters.